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01 Free Studying Resources 08 Junior College 2 Chemistry

Chapter 16: Nitrogen Compounds

Chapter 16: Nitrogen Compounds

Amino Acids & Proteins

Students need to be clear of what amino acids are and their characteristics.
Properties:

1. Amino acids contain both –NH₂ (amino) group and –COOH (carboxyl) group
2. This is how an α-amino acid looks like:

n α-amino acid

Where R is either a H or an alkyl group
(Do note that for the ‘A’ Level syllabus, you are only required to know about α-amino acids)

3. All α-amino acids have at least one chiral carbon atom (α-carbon), thus able to have enantiomers (optically active). (Recall Enantiomerism)
Exception: Glycine (aminoethanoic acid)

4. Since amino acids show the properties of amines (basic) and carboxylic acids (acidic), amino acids are therefore amphoteric.

Acid-Base Properties

Since amino acids contain both –CO₂H and –NH₂ groups, what is the pH of amino acids?
Well this depends on the structure of the amino acid. More specifically, it depends on the number of –CO₂H and –NH₂ groups present.

Number of –CO₂H and
–NH₂ groups
Neutral, Acidic or Basic? Colour of Litmus
–CO₂H = –NH₂ neutral purple
–CO₂H > –NH₂ acidic red
–CO₂H < –NH₂ basic blue
Number of –CO₂H and
–NH₂ groups
–CO₂H = –NH₂
Neutral, Acidic or Basic?
neutral
Colour of Litmus
purple
Number of –CO₂H and
–NH₂ groups
–CO₂H > –NH₂
Neutral, Acidic or Basic?
acidic
Colour of Litmus
red
Number of –CO₂H and
–NH₂ groups
–CO₂H < –NH₂
Neutral, Acidic or Basic?
basic
Colour of Litmus
blue
pl

pI is the isoelectric point where the amino acid has no net charge. It is the pH at which the amount of positive and negative charges on an amino acid exactly balances each other. It is also known as the point where the amino acid is electrically neutral and is not necessarily pH 7.
Note: Amino acids can be a buffer since it is able to remove small amounts of H⁺ and OH⁻, rendering the pH almost unchanged.

Now that we are clear of what amino acids are, let us take a look at zwitterions:

Zwitterions

Zwitterion is a particle containing both a positive and a negative ion, and it has no net electrical charge. In other words, it is a neutral particle.

How it is formed: Acid-base reaction occurs internally in the amino acid, whereby H⁺ ion from the acidic –COOH group moves to the basic –NH₂ group.

molecule
Zwitterion

Physical Properties:
- Crystalline solids with strong ionic bonds between the zwitterions. Thus, it has a high melting point. (Recall Chemical Bonding for explanation)

Worked Example 1:

A sodium salt of glutamic acid, monosodium glutamate (MSG), is a flavour enhancer that occurs naturally in tomatoes, mushrooms and some other vegetables.

WE-1

(i) Draw the structural formula of the zwitterion formed from glutamic acid.

Answer:

zwitterion-formed-from-glutamic-acid

Recall what a zwitterion is and how it is formed. (Zwitterion is a particle containing both a positive and a negative ion, and it has no net electrical charge. H⁺ ion from the acidic –COOH group moves to the basic –NH2 group. )

(ii) Suggest a likely pH for an aqueous solution of glutamic acid.

Answer: 3

(iii) Explain with the aid of relevant equations, how glutamic acid can act as a buffer on adding separate small amounts of:

(a) Dilute HCl
Answer:

Dilute HCI

pH remains relatively constant as most of the added HCl is removed by the reservoir of glutamic acid.

(b) Dilute KOH
Answer:

dilute-koh

pH remains relatively constant as most of the added KOH is removed by the reservoir of glutamic acid.

(iiii) (a) Glutamic acid is a compound of many proteins and peptides. Draw the structural formula of a dipeptide formed between glutamic acid and glycine, NH₂CH₂CO₂H.
Answer:

Peptide

(b) Name the functional group which is present in the dipeptide but not in the amino acids.
Answer: Peptide